What's the screen saver showing? Our graphical client shows real time visualizations of the simulations being performed. The molecule drawn is the current atomic configuration ("fold") of the protein being simulated on your computer and the graph on the bottom shows the potential energy in femtosecond increments. We display the protein in a variety of visualization styles and orientations both to get a better look at the protein fold as well as simple aesthetics. The fact that the protein visualization "scrolls" out does not have any biological meaning; it's just a non-CPU intensive and visually appealing way to show the protein.
Yep, looks like mine has multiple chains. There's no connection between all it's parts.
http://img403.imageshack.us/img403/3341/screenshotte0.png
http://img403.imageshack.us/img403/5260/screenshot2dx5.png
So damn slow...it drives me nuts.
What proteins are you currently working on, guys?
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Still the bad cop.