Are there any yuri manga with BDSM plot? If it'll be shojo-ai it's ok and mayby even prefer couse GL as I know often have better story)

lol, you're askin' for a story? Hmm, I don't think there are any.

I only know of Hentai Yuri, so if
you want those, I could suggest. : x

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Ok, then just BDSM yuri hentai)

Hentai that features Yuri and bondage... but
not necessarily together nor at the same time. :/

Birthday
Cho Danchizuma Keiko
Kakusei Aido
Kyoushikyoku
Loli Can
Mebina Tachi no Gogo (this one's freaky~)
Nakadashi Gakuen Choukyouka
Parabellum
Rutsubo
Shiru o Suu Nawa
Sweet Cream
The New Bondage Fairies

Hope this helps. 😮

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Shoujo sect has some of it. Including some mild puppy-play. =)